Possible to void a previously cleared check?

I have a strange situation I'm trying to work through. We use our bank's bill pay system to issue payables checks. For each payable item we submit the bank immediately draws the funds from our account when they process and mail the check. We then clear each of those items in our bank reconciliation that month because the funds have been removed from our account. We just had a check that was not deposited by the payee after 90 days so the funds were returned by our bank to our account per their policy. We are not planning to reissue the check. Is there a way to void a previously cleared check? I know I can do a JE to account for the return of the cash and the reversal of the expense, but that would still leave the payment showing in the Payables system. Does anyone have a good solution?

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