Mark invoices as paid when running dual systems

We are still using our old AP system and cutting checks through there as we get all the previous months of data into FE NXT. We have all our ap invoices loaded in but now need to mark them as paid. I thought we could use manual check but see you can only pay one invoice via manual check option. I did see you could use bank draft option but is this my best option when I have several months worth of invoices to mark as paid and will need to keep doing so for another couple of months while we reconcile all the months of data we had to enter.

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